they have done with vs they are done with

Some examples from the web:

• It is especially difficult when we see no signs, at this moment, of Iran signing a contract to build a nuclear power plant apart from what they have done with the Russians in Bushehr, for which the Russians have supplied the fuel.
• What would they have done with the days since?
• If they'd have executed you, what would they have done with me?
• What could they have done with the pictures that they could have shown if they were able to use the modern means of communication to win people's hearts and minds?
• They could have done with a bit of sensitivity.
• They have done excellent work with respect to this important matter.
• Now across the border they have done the same with my sister.
• I hope that the excellent work they have done will meet with complete support tomorrow.
• You'd think they'd have done something with it.
• I would like to extend very warm thanks to Mr Corbett and Mr Méndez de Vigo for the outstanding work they have done together with the Committee on Constitutional Affairs, and also to all those who assisted them in it.
• They have done so with good humour, and I congratulate them for that as, on the same subject last year, they did so rather violently - which just goes to show that we were right to amend the Rules of Procedure.
• They have done their duties with regard to the multilateral institutions and have fully complied with what the European Union expected of them.
• In his legal view, if a man and woman contrive to be alone together, they must have done so with illicit purpose.
• And what have they done with the replacement?
• And what have they done with the replacement?
• Except they wouldn't have done it with as much style.
• Why can't they just attack and have done with it?
• They should have done that commercial with that guy;
• A dentist said they could not have been done with any of the current equipment in use.
• What have they done with the Fengs?

Some examples from the web:

• No, they do not... because when they are done with their victims, usually very little remains.
• You give your whole life to a place, and then when they are done with you they just turn you out.
• I need you to to grout the hallway floor as soon as they are done with the tile install.
• I believe they are not done with you yet.
• Are they done with the pictures in there?
• They aren't done filling her with their poison.
• I think they are done Randy.
• They are done before you know it, and once they are done they make you do other things until at last, everything comes between you and the man you wanted to be.
• I therefore fear that things will not get solved sufficiently promptly if they are done on a voluntary basis.
• The Commission is committed to promoting a high level of protection of subjects participating in clinical trials wherever they are done.
• It is committed to promoting the same high level of protection of subjects participating in clinical trials, wherever they are done.
• The Commission is committed to promote a high level of protection of subjects participating in clinical trials wherever they are done.
• People should not assume that things are always better if they are done by a public law institution.
• Coroner's men, put a sheet on the body as soon as they are done.
• And when they are done the mob will tear you apart, limb by limb.
• Tell me you are done with this.
• Ms. Sciuto and Dr. Mallard are done with the cold case.
• Jesse and his boys are done with you anyway.
• On Sundays after the neighbors are done with it.
• When you are done with it, return home quickly.